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| Keywords: Minimum Evolution-Tree Aleurobotrys and related Taxa.svg Figure Figure Evolutionary relationships of Aleurobotrys and related Taxa<br/> The evolutionary history was inferred using the Minimum Evolution method 1 The optimal tree with the sum of branch length 0 24349473 is shown The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test 1000 replicates are shown next to the branches 2 The tree is drawn to scale with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree For all > 50 The evolutionary distances were computed using the Kimura 2-parameter method 3 and are in the units of the number of base substitutions per site The ME tree was searched using the Close-Neighbor-Interchange CNI algorithm 4 at a search level of 2 The Neighbor-joining algorithm 5 was used to generate the initial tree The analysis involved 20 nucleotide sequences All positions with less than 95 site coverage were eliminated That is fewer than 5 alignment gaps missing data and ambiguous bases were allowed at any position There were a total of 1171 positions in the final dataset Evolutionary analyses were conducted in http //megasoftware net/ MEGA6 6 <br/> 1 Rzhetsky A and Nei M 1992 A simple method for estimating and testing minimum evolution trees Molecular Biology and Evolution 9 945-967 <br/> 2 Felsenstein J 1985 Confidence limits on phylogenies An approach using the bootstrap Evolution 39 783-791 <br/> 3 Kimura M 1980 A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences Journal of Molecular Evolution 16 111-120 <br/> 4 Nei M and Kumar S 2000 Molecular Evolution and Phylogenetics Oxford University Press New York 5 Saitou N and Nei M 1987 The neighbor-joining method A new method for reconstructing phylogenetic trees Molecular Biology and Evolution 4 406-425 <br/> 6 Tamura K Stecher G Peterson D Filipski A and Kumar S 2013 MEGA6 Molecular Evolutionary Genetics Analysis version 6 0 Molecular Biology and Evolution30 2725-2729 <br/> ; List with GenBank Sequences http //www ncbi nlm nih gov/nuccore/AF506479 Stereum hirsutum AF506479 http //www ncbi nlm nih gov/nuccore/AF506482 Stereum subtomentosum AF506482 http //www ncbi nlm nih gov/nuccore/AF506480 Stereum reflexulum AF506480 http //www ncbi nlm nih gov/nuccore/AF506481 Stereum rugosum AF506481 http //www ncbi nlm nih gov/nuccore/AF506400 Aleurodiscus lividocoeruleus AF506400 http //www ncbi nlm nih gov/nuccore/AF506491 Xylobolus frustulatus AF506491 http //www ncbi nlm nih gov/nuccore/AF506382 Conferticium ravum AF506382 http //www ncbi nlm nih gov/nuccore/AF506381 Gloeocystidiellum heimii AF506381 http //www ncbi nlm nih gov/nuccore/AF506442 Gloeocystidiellum triste AF506442 http //www ncbi nlm nih gov/nuccore/AF506438 Gloeocystidiopsis aff flamma AF506438 http //www ncbi nlm nih gov/nuccore/AF506437 Gloeocystidiopsis flammea AF506437 http //www ncbi nlm nih gov/nuccore/AF506398 Aleurobotrys botryosus AF506398 http //www ncbi nlm nih gov/nuccore/AF506401 Aleurodiscus dextrinoideocerussatus AF506401 http //www ncbi nlm nih gov/nuccore/AF506399 Aleurodiscus cerussatus AF506399 http //www ncbi nlm nih gov/nuccore/AF506448 Gloeomyces graminicola AF506448 http //www ncbi nlm nih gov/nuccore/AF506377 Boidinia macrospora AF506377 http //www ncbi nlm nih gov/nuccore/AF506432 Gloeocystidiellum aspellum AF506432 http //www ncbi nlm nih gov/nuccore/AF506434 Gloeocystidiellum compactum AF506434 http //www ncbi nlm nih gov/nuccore/AF506397 Aleurodiscus amorphus AF506397 http //www ncbi nlm nih gov/nuccore/AF506414 Lactarius volemus AF506414 own 2014-08-24 Thkgk Cc-zero Stereaceae Aleurobotrys botryosus | ||||
